PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0018s0040.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 352aa    MW: 40134.6 Da    PI: 8.7997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0018s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08833127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          ykt+ C+ +++ G+C++  +C+FaHg+
  Sphfalx0018s0040.2.p  8 YKTKMCSLYMQRGYCPR-QSCSFAHGE 33
                          9****************.*******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-14339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.71E-7638IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103734IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031733IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5833IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPYAPDLYKT KMCSLYMQRG YCPRQSCSFA HGESELRKLP GRYDSGGGDL RRSPTYWRRS  60
PPREEREHNW PHDHRSPQHD RGQTQSKSPA KRRQSDSLSP QRSPEYKRKD SKKHPDSTEP  120
HLSDVSGPID GAEDVADKDN DKDRSRSIST SSEDTVEEQL QEVYSSNETL LDQKAKLEHS  180
LQTKVLKTTE LSEKIAQLET QLASTHNVCK GLASRTKKFV KAYKGFFRAQ EELKKSQTKL  240
MKLVDDMSGD NGPKLDMDME YLDTAITSNE EPMHELPTNN QTNHRLLAEG SHTMPRQENT  300
DIKTSNHLPS TVEQPKLVEN SKQRKLTTAQ ERRRALLQKA LQQGGLFVEQ S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S31_349V6.19e-54(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-27C3H family protein